8:45 - COFFEE AND LIGHT BREAKFAST
9:00-9:30 - Wilfried Guiblet and Monika Cechova: Introductions.
9:30-10:15 - Cooduvalli Shashikant: Is there a reproducibility crisis?
10:15-10:35 - COFFEE BREAK
10:35-11:20 - James Broach: “10% of the time, it works every time” - Recognizing sloppy science
11:20-12:05 - Keith Baggerly: http://videolectures.net/cancerbioinformatics2010_baggerly_irrh/
12:05-1:15 - LUNCH
1:15-2:00 - Cheryl Keller: It’s a Mad, Mad, Metadata World
2:00-2:45 - Molly Hall: Quality control is essential to ensuring reproducibility in genotype and non-genetic data
2:45-3:30 - Vasant Honavar: Computational reproducibility and data sharing
3:30-3:50 - BREAK
3:50-4:05 - Aswathy Sebastian: An example of reproducibility incident
4:05-4:50 - Instructions by Shaun Mahony and TAs to Tuesday's sessions
The basics of computational reproducibility: version control, documentation, automation.
Instructor: Dr. Shaun Mahony, Assistant Professor, Biochemistry & Molecular Biology
Proper statistical inference, effective plotting and reproducible reporting
Instructor: Dr. Qunhua Li
Monika Cechova, Anton Nekrutenko | firstname.lastname@example.org, email@example.com
For those that registered for the workshop, information is available at
Course location, hours, requirements
Please contact the organizers for registration or other bootcamp related issues:
The boot camp is organized by the Computation, Bioinformatics and Statistics Predoctoral Training Program at Penn State supported by the NIH T32 program. The boot camp is funded by participating colleges at Penn State.
The boot camp was first conceived and supported in Jun 2016 by the Administrative Supplement to NIGMS Predoctoral Training Grants (PA-15-136)