PSU Bootcamp on Reproducible Research
PSU Bootcamp on Reproducible Research
June 6-10, 2016
Day 1: Perspectives on Data Reproducibility
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Dr. Cooduvali Shashikant
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Dr. Ross Hardison
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Dr. Qunhua Li
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Dr. James Broach
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Dr. George Perry
Day 2: Software Carpentry
The basics of computational reproducibility: version control, documentation, automation
Instructor:
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Dr. Istvan Albert
Day 3: Statistical Analysis
Reproducible statistical inference, simulations, RNA-Seq bootcamp
Instructor:
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Dr. Naomi Altman
Day 4: Reproducible research with Galaxy
Introduction to Galaxy and Variant Calling, Jupyter Notebooks, RNA-Seq with Galaxy
Instructor:
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Dr. Anton Nekrutenko
General Information
Course location, hours, requirements
- Boot camp will be held Jun 6-10; 9-5PM in 011 Life Science Building
- Breakfasts and lunches are planned. Participants are on their own for most dinners.
Funding and Support
The bootcamp is funded by the Administrative Supplement to NIGMS Predoctoral Training Grants (PA-15-136)
The boot camp is organized by the Computation, Bioinformatics and Statistics Predoctoral Training Program at Penn State supported by the NIH T32 program.
See the Photo Album