- 8:45 - 9:00 - Coffee and light breakfast
- 9:00 - 10:30 - Workshop by Dr. Istvan Albert, Professor of Bioinformatics
- 10:30 - 11:00 - Coffee break
- 11:00 - 11:45 - Workshop (continued)
- 12:00 - 1:30 - Lunch
- 1:30 - 3:00 - Workshop (continued)
- 3:00 - 3:30 - Coffee break
- 3:30 - 5:00 - Workshop (continued)
Lessons on Software Carpentry
Off the beaten path
Has git installation and git survival guide:
- Install Git
- Lessons on Software Carpentry
- Perform the 15 minute markdown tutorial
- Perform the 15 minute git tutorial
Leave your Mark(down)
- Create a GitHub account
- Fork the bootcamp repository into your own account.
- Find the markdown document that lists participants:
- Add your name and affiliation to it.
- Create a pull request back to
- Watch us suffer merging changes from 30 people.
- Enjoy the new site (once it is merged).
How good are these "best practices"
Look at Best Practices as published
in Best Practices for Scientific Computing" , PLOS Biology, Jan. 2014.
Frankly there just seem to be too many of them...
Imagine that you need to simplify this list:
- Suppose that must reduce to just three.
Which one will these be and why?
Basically: What are the
most important best practices?
- Suppose that want to remove three.
Which one will these be an why?
Basically: What are the least useful best practices?
Add your own and see the results at Best Practices: Keep or Toss
The following are optional:
- Install and run fossil
- Install and run asciidoctor
- Install and run snakemake
Create a markdown page in the
web/2016/share folder that summarizes your expreiences.